Francisco Couto

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Faria, D., C. Pesquita, I. Mott, C. Martins, F. M. Couto, and I. F. Cruz, "Tackling the challenges of matching biomedical ontologies", Journal of biomedical semantics, vol. 9, no. 1: BioMed Central, pp. 4, 2018.
Asif, M., H. F. Martiniano, C. Rasga, A. R. Marques, J. X. Santos, F. M. Couto, and AM. Vicente, "Translating the complex ASD genetic architecture into clinical phenotype using an integrative system biology approach", European Society of Human Genetics, 16-19 june, 2018: Instituto Nacional de Saúde Doutor Ricardo Jorge, IP, 2018.
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Barata, A., L. Carvalho, and F. M. Couto, "Anthropometric data analytics: a portuguese case study", International Conference on Practical Applications of Computational Biology & Bioinformatics: Springer, pp. 92–100, 2017.
Ferreira, J. D., B. Inácio, R. M. Salek, and F. M. Couto, "Assessing Public Metabolomics Metadata, Towards Improving Quality", Journal of integrative bioinformatics, vol. 14, no. 4: De Gruyter, 2017.
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Fernandes, M., J. Decouchant, F. M. Couto, and P. Esteves-Verissimo, "Cloud-Assisted Read Alignment and Privacy", 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, vol. 616: Springer, pp. 220, 2017.
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Cogo, V. V., A. Bessani, F. M. Couto, M. Gama-Carvalho, M. Fernandes, and P. Esteves-Verissimo, "How Can Photo Sharing Inspire Sharing Genomes?", 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, vol. 616: Springer, pp. 74, 2017.
Cogo, V. V., A. Bessani, F. M. Couto, M. Gama-Carvalho, M. Fernandes, and P. Esteves-Verissimo, "How can photo sharing inspire sharing genomes?", International Conference on Practical Applications of Computational Biology & Bioinformatics: Springer, pp. 74–82, 2017.
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Lobo, M., A. Lamurias, and F. M. Couto, "Identifying Human Phenotype Terms by Combining Machine Learning and Validation Rules", BioMed Research International, vol. 2017: Hindawi, 2017.
Campos, L., V. Pedro, and F. Couto, "Impact of translation on named-entity recognition in radiology texts", Database, vol. 2017: Oxford University Press, 2017.
Asif, M., C. Rasga, H. Martiniano, JX. Santos, AR. Marques, FM. Couto, and AM. Vicente, "An integrative system biology approach for dissecting Autism Spectrum Disorder", 2º Dia do Jovem Investigador do Instituto Nacional de Saúde Doutor Ricardo Jorge, 8 maio 2017: Instituto Nacional de Saúde Doutor Ricardo Jorge, IP, 2017.
Asif, M., H. F. Martiniano, C. Rasga, A. R. Marques, J. X. Santos, F. M. Couto, A. M. Vicente, and , "An integrative system biology approach to delineate complex genotype-phenotype associations in Autism Spectrum Disorder", 2nd BioSys Retreat 2017, 6-7 October, 2017: Instituto Nacional de Saúde Doutor Ricardo Jorge, IP, 2017.
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Couto, F. M., L. Campos, and A. Lamurias, "MER: a minimal named-entity recognition tagger and annotation server", Proceedings of the BioCreative, Conference: BeCalm challenge evaluation workshop (Biocreative V.5), at Barcelona, Spain, vol. 5, 2017.
Inácio, B., J. D. Ferreira, and F. M. Couto, "Metadata Analyser: measuring metadata quality", International Conference on Practical Applications of Computational Biology & Bioinformatics: Springer, pp. 197–204, 2017.
Rodrigues, M. J., and F. M. Couto, "MoRS at SemEval-2017 task 3: Easy to use SVM in ranking tasks", Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval-2017), pp. 287–291, 2017.
Campos, L., and F. Couto, "MRA-Proof of Concept of a Multilingual Report Annotator Web Application", arXiv preprint arXiv:1704.01748, 2017.
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Lamurias, A., D. Sousa, S. Pereira, L. Clarke, and F. M. Couto, "ULISBOA at SemEval-2017 Task 12: Extraction and classification of temporal expressions and events", Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval-2017), pp. 1019–1023, 2017.
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Gonçalves, D., M. Costa, and F. M. Couto, "A Flexible Recommendation System for Cable TV", arXiv preprint arXiv:1609.02451, 2016.
Bastos, H. P., L. Sousa, L. A. Clarke, and F. M. Couto, "Functional coherence metrics in protein families", Journal of biomedical semantics, vol. 7, no. 1: BioMed Central, pp. 41, 2016.
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Barros, M., F. M. Couto, and , "Knowledge Representation and Management: a linked data perspective", IMIA Yearbook: Schattauer Publishers, pp. 178–183, 2016.
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Lamurias, A., M.. Lobo, M.. Antunes, L.. Clarke, and F. Couto, "Identifying chemical entities in patents using brown clustering and semantic similarity", 5th BioCreative Challenge Evaluation, 2015.
Lamurias, A., L.. Clarke, and F. Couto, "IICE: web tool for automatic identification of chemical entities and interactions", European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML-PKDD), Demo Track, 2015.
Lamurias, A., J. Ferreira, and F. Couto, "Improving chemical entity recognition through h-index based semantic similarity", Journal of Cheminformatics, vol. 7, pp. S13, 1-20, 2015.
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Leal, A.., B.. Martins, and F. Couto, "ULisboa: Recognition and Normalization of Medical Concepts", 8th International Workshop on Semantic Evaluation (SemEval), 2015.
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Lamurias, A., J. Ferreira, and F. Couto, "Chemical Named Entity Recognition: Improving Recall Using a Comprehensive List of Lexical", Bioinformatics (Pacbb 2014), vol. 294: Springer, pp. 253, 2014.
Lamurias, A., J. Ferreira, and F. Couto, "Chemical named entity recognition: Improving recall using a comprehensive list of lexical features", 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014): Springer International Publishing, pp. 253–260, 2014.
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Lamurias, A., J. Ferreira, and F. Couto, "Identifying interactions between chemical entities in biomedical text", Journal of integrative bioinformatics, vol. 11, no. 3, pp. 247, 2014.
Lamurias, A., and F. Couto, "Identifying Interactions Between Chemical Entities in Text", Bioinformatics Open Days, University of Braga, 2014.
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Costa, M., F. Couto, and M. J. Silva, "Learning temporal-dependent ranking models", Proceedings of the 37th international ACM SIGIR conference on Research & development in information retrieval: ACM, pp. 757–766, 2014.
Leitão, N., J.. Leitão, and F. Couto, "LLC-GNUMAP: Scalable, Precise, and High-Coverage Genomics Mapping", Bioinformatics Open Days, University of Braga, 2014.
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Couto, F., "Rating, recognizing and rewarding metadata integration and sharing on the semantic web", 10th International Workshop on Uncertainty Reasoning for the Semantic Web (URSW 2014), pp. 67, 2014.
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Grego, T., and F. Couto, "Enhancement of chemical entity identification in text using semantic similarity validation", PloS one, vol. 8, no. 5: Public Library of Science, pp. e62984, 2013.
Machado, C. M., A. T. Freitas, and F. Couto, "Enrichment analysis applied to disease prognosis.", J. Biomedical Semantics, vol. 4, pp. 21, 2013.
Ferreira, J., J. Hastings, and F. Couto, "Exploiting disjointness axioms to improve semantic similarity measures", Bioinformatics, vol. 29, no. 21: Oxford University Press, pp. 2781–2787, 2013.
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Couto, F., and S. H Pinto, "The next generation of similarity measures that fully explore the semantics in biomedical ontologies", Journal of bioinformatics and computational biology, vol. 11, no. 05: The Authors, 2013.
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Moreira, S., J. Filgueiras, B. Martins, F. Couto, and M. J. Silva, "Reaction: A naive machine learning approach for sentiment classification", Second Joint Conference on Lexical and Computational Semantics (* SEM), vol. 2, pp. 490–494, 2013.
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Pesquita, C., D. Faria, C. Stroe, E. Santos, I. F. Cruz, and F. Couto, "What's in a 'nym'? Synonyms in Biomedical Ontology Matching", The Semantic Web–ISWC 2013: Springer Berlin Heidelberg, pp. 526–541, 2013.
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Grego, T., C. Pesquita, H. Bastos, and F. Couto, "Chemical entity recognition and resolution to ChEBI", International Scholarly Research Notices, vol. 2012: Hindawi Publishing Corporation, 2012.
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Pesquita, C., and F. Couto, "Predicting the extension of biomedical ontologies", PLoS computational biology, vol. 8, no. 9: Public Library of Science, pp. e1002630, 2012.
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Faria, D., C. Pesquita, E. Santos, F. Couto, C. Stroe, and I. F. Cruz, "Testing the AgreementMaker System in the Anatomy Task of OAEI 2012", arXiv preprint arXiv:1212.1625, 2012.
Batista, D. S., J. Ferreira, F. Couto, and M. J. Silva, "Toponym disambiguation using ontology-based semantic similarity", Computational Processing of the Portuguese Language: Springer Berlin Heidelberg, pp. 179–185, 2012.
Machado, C. M., F. Couto, A. R. Fernandes, S. Santos, and A. T. Freitas, "Toward a translational medicine approach for hypertrophic cardiomyopathy", Information Technology in Bio-and Medical Informatics: Springer Berlin Heidelberg, pp. 151–165, 2012.
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Ferreira, J., D. Paolotti, F. Couto, and M. J. Silva, "On the usefulness of ontologies in epidemiology research and practice", Journal of epidemiology and community health: BMJ Publishing Group Ltd, pp. jech–2012, 2012.
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Bastos, H., B. Tavares, C. Pesquita, D. Faria, and F. Couto, "Application of gene ontology to gene identification.", Methods in molecular biology (Clifton, NJ), vol. 760: Springer, pp. 141–157, 2011.
Bastos, H., B. Tavares, C. Pesquita, D. Faria, and F. Couto, "Application of Gene Ontology to gene identification", In Silico Tools for Gene Discovery: Humana Press, pp. 141–157, 2011.

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