Francisco Couto

2015
Groza, T.., Köhler S.., Doelken S.., Collier N.., Oellrich A.., Smedley D.., et al. (2015).  Automatic concept recognition using the Human Phenotype Ontology}reference and test suite corpora. Database. 2015, 1-13.
Krallinger, M.., Rabal O.., Leitner F.., Vazquez M.., Salgado D.., Lu Z.., et al. (2015).  The CHEMDNER corpus of chemicals and drugs and its annotation principles. Journal of Cheminformatics. 7, S2, 1-20.
Bastos, H., Sousa L.., Clarke L.., & Couto F. (2015).  GRYFUN: A Web Application for GO Term Annotation Visualization and Analysis in Protein Sets. PLoS ONE. 10, 1-20.
Cogo, V., Bessani A., Couto F., & Verissimo P. (2015).  A High-Throughput Method to Detect Privacy-Sensitive Human Genomic Data. Workshop on Privacy in the Electronic Society (WPES).
Lamurias, A., Lobo M.., Antunes M.., Clarke L.., & Couto F. (2015).  Identifying chemical entities in patents using brown clustering and semantic similarity. 5th BioCreative Challenge Evaluation.
Lamurias, A., Clarke L.., & Couto F. (2015).  IICE: web tool for automatic identification of chemical entities and interactions. European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML-PKDD), Demo Track.
Lamurias, A., Ferreira J., & Couto F. (2015).  Improving chemical entity recognition through h-index based semantic similarity. Journal of Cheminformatics. 7, S13, 1-20.
Leal, A.., Martins B., & Couto F. (2015).  Recognition and Normalization of Biomedical Entities Based on Ontologies. Bioinformatics Open Days, University of Lisbon.
Machado, C. M., Rebholz-Schuhmann D., Freitas A. T., & Couto F. (2015).  The semantic web in translational medicine: current applications and future directions. Briefings in bioinformatics. 16, 89–103.
Barata, C., Abreu M., Torres P., Teixeira J., Guerreiro T., & Couto F. (2015).  Social Impact-Identifying Quotes of Literary Works in Social Networks. Progress in Artificial Intelligence. 789–795.
Leal, A.., Martins B.., & Couto F. (2015).  ULisboa: Recognition and Normalization of Medical Concepts. 8th International Workshop on Semantic Evaluation (SemEval).
2014
Faria, D., Pesquita C., Santos E., Cruz I.., & Couto F. (2014).  AgreementMakerLight 2.0: Towards Efficient Large-Scale Ontology Matching. International Semantic Web Conference (ISWC).
Faria, D., Pesquita C., Santos E., Cruz I. F., & Couto F. (2014).  AgreementMakerLight: A Scalable Automated Ontology Matching System. DILS 2014. 29.
Faria, D., Martins C., Nanavaty A.., Taheriand A.., Pesquita C., Santos E., et al. (2014).  AgreementMakerLight results for OAEI 2014. The Ninth International Workshop on Ontology Matching (OM-2013).
Faria, D., Pesquita C., Santos E., Cruz I. F., & Couto F. (2014).  Automatic Background Knowledge Selection for Matching Biomedical Ontologies. PloS one. 9, e111226.
Pesquita, C., Cheatham M., Faria D., Barros J., Santos E., & Couto F. (2014).  Building reference alignments for compound matching of multiple ontologies using OBO cross-products. Ontology Matching Workshop at ISWC 2014.
Lamurias, A., Ferreira J., & Couto F. (2014).  Chemical Named Entity Recognition: Improving Recall Using a Comprehensive List of Lexical. Bioinformatics (Pacbb 2014). 294, 253.
Lamurias, A., Ferreira J., & Couto F. (2014).  Chemical named entity recognition: Improving recall using a comprehensive list of lexical features. 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014). 253–260.
Silva, L., Couto F., Manso H.., & Vicente A.. (2014).  Development of a semantic model for Cerebrovascular Accident (CVA) Patients. Bioinformatics Open Days, University of Braga.
Pesquita, C., Ferreira J., Couto F., & Silva M. J. (2014).  The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources. Journal of biomedical semantics. 5, 4.
Leitão, N., Leitão J.., & Couto F. (2014).  Expansão do Espaço de Procura em Mapeamento Genómico de Alto Rendimento. INForum - Simp{ó}sio de Inform{á}tica.
Mendes, T.., Rodrigues B.., Moitinho A.., Gomes M.., Couto F., Guerreiro T., et al. (2014).  Exploração Visual Online de Bases de Dados Astronómicas. INForum - Simpósio de Informática.
Martins, J., Carilho J., Schnell O., Duarte C., Couto F., Carriço L., et al. (2014).  Friendsourcing the unmet needs of people with dementia. Proceedings of the 11th Web for All Conference. 35.
Ferreira, J., Bono B.., & Couto F. (2014).  From data to knowledge: a tool for clustering multi-scale resources for physiology research. Virtual Physiological Human (VPH).
Lamurias, A., Ferreira J., & Couto F. (2014).  Identifying interactions between chemical entities in biomedical text. Journal of integrative bioinformatics. 11, 247.

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