João D. Ferreira
"Improving chemical entity recognition through h-index based semantic similarity", Journal of Cheminformatics, vol. 7, pp. S13, 1-20, 2015.
"Chemical named entity recognition: Improving recall using a comprehensive list of lexical features", 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014): Springer International Publishing, pp. 253–260, 2014.
"Chemical Named Entity Recognition: Improving Recall Using a Comprehensive List of Lexical", Bioinformatics (Pacbb 2014), vol. 294: Springer, pp. 253, 2014.
"The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources", Journal of biomedical semantics, vol. 5: BioMed Central, pp. 4, 2014.
"From data to knowledge: a tool for clustering multi-scale resources for physiology research", Virtual Physiological Human (VPH), 2014.
"Identifying interactions between chemical entities in biomedical text", Journal of integrative bioinformatics, vol. 11, no. 3, pp. 247, 2014.
"Exploiting disjointness axioms to improve semantic similarity measures", Bioinformatics, vol. 29, no. 21: Oxford University Press, pp. 2781–2787, 2013.
"Bringing epidemiology into the Semantic Web.", ICBO, 2012.
"The Epidemic Marketplace Platform: towards semantic characterization of epidemiological resources using biomedical ontologies.", ICBO, 2012.
"The Epidemic Marketplace Platform: towards semantic characterization of epidemiological resources using biomedical ontologies", International Conference on Biomedical Ontologies, 2012.
"Toponym disambiguation using ontology-based semantic similarity", Computational Processing of the Portuguese Language: Springer Berlin Heidelberg, pp. 179–185, 2012.
"On the usefulness of ontologies in epidemiology research and practice", Journal of epidemiology and community health: BMJ Publishing Group Ltd, pp. jech–2012, 2012.
"Generic Semantic Relatedness Measure for Biomedical Ontologies.", ICBO, vol. 833, 2011.
"Semantic similarity for automatic classification of chemical compounds", PLoS computational biology, vol. 6, no. 9: Public Library of Science, pp. e1000937, 2010.
"The Biomedical Ontology Applications (BOA) framework", evaluation, vol. 9, no. S5, pp. S4, 2008.