Cátia Pesquita

2016
Faria, D., C. Pesquita, B. S. Balasubramani, C. Martins, J. Cardoso, H. Curado, F. M. Couto, and I. F. Cruz, "OAEI 2016 results of AML.", OM@ ISWC, pp. 138–145, 2016.
Bakhshandeh, M., C. Pesquita, and J. Borbinha, "An Ontological Matching Approach for Enterprise Architecture Model Analysis", International Conference on Business Information Systems: Springer, pp. 315–326, 2016.
Cardoso, J., M. Bakhshandeh, D. Faria, C. Pesquita, and J. Borbinha, "Ontology-Based Approach for Heterogeneity Analysis of EA Models", International Conference on Business Process Management: Springer, pp. 131–142, 2016.
Achichi, M., M. Cheatham, Z. Dragisic, J. Euzenat, D. Faria, A. Ferrara, G. Flouris, I. Fundulaki, I. Harrow, V. Ivanova, et al., "Results of the ontology alignment evaluation initiative 2016", CEUR workshop proceedings, vol. 1766: RWTH, pp. 73–129, 2016.
Dragisic, Z., V. Ivanova, P. Lambrix, D. Faria, E. Jiménez-Ruiz, and C. Pesquita, "User validation in ontology alignment", International Semantic Web Conference: Springer, pp. 200–217, 2016.
Ivanova, V., P. Lambrix, S. Lohmann, and C. Pesquita, "VOILA! 2016: Proceedings of the 2nd International Workshop on Visualization and Interaction for Ontologies and Linked Data, Co-located with ISWC 2016, Kobe, Japan, October 17, 2016", 2nd International Workshop on Visualization and Interaction for Ontologies and Linked Data, Kobe, Japan, October 17: CEUR Workshop Proceedings, 2016.
2014
Faria, D., C. Pesquita, E. Santos, I.. Cruz, and F. Couto, "AgreementMakerLight 2.0: Towards Efficient Large-Scale Ontology Matching", International Semantic Web Conference (ISWC), 2014.
Faria, D., C. Pesquita, E. Santos, I. F. Cruz, and F. Couto, "AgreementMakerLight: A Scalable Automated Ontology Matching System", DILS 2014, pp. 29, 2014.
Faria, D., C. Martins, A.. Nanavaty, A.. Taheriand, C. Pesquita, E. Santos, I.. Cruz, and F. Couto, "AgreementMakerLight results for OAEI 2014", The Ninth International Workshop on Ontology Matching (OM-2013), 2014.
Faria, D., C. Pesquita, E. Santos, I. F. Cruz, and F. Couto, "Automatic Background Knowledge Selection for Matching Biomedical Ontologies", PloS one, vol. 9, no. 11: Public Library of Science, pp. e111226, 2014.
Pesquita, C., M. Cheatham, D. Faria, J. Barros, E. Santos, and F. Couto, "Building reference alignments for compound matching of multiple ontologies using OBO cross-products", Ontology Matching Workshop at ISWC 2014, 2014.
Pesquita, C., J. Ferreira, F. Couto, and M. J. Silva, "The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources", Journal of biomedical semantics, vol. 5: BioMed Central, pp. 4, 2014.
Ivanova, V., T. Kauppinen, S. Lohmann, S. Mazumdar, C. Pesquita, and K. Xu, "Proceedings of the International Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics", International Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics: CEUR Workshop Proceedings, 2014.
Faria, D., E. Jiménez-Ruiz, C. Pesquita, E. Santos, and F. Couto, "Towards annotating potential incoherences in BioPortal mappings", International Semantic Web Conference, 2014.
Pesquita, C., D. Faria, E. Santos, J-M. Neefs, and F. Couto, "Towards visualizing the alignment of large biomedical ontologies", Data Integration in the Life Sciences (DILS), 2014.
2009
Pesquita, C., D. Pessoa, D. Faria, and F. Couto, "CESSM: collaborative evaluation of semantic similarity measures", JB2009: Challenges in Bioinformatics, 2009.
Pesquita, C., D. Pessoa, D. Faria, and F. Couto, Collaborative Evaluation of GO-based Similarity Measures, : 12th Annual Bio-Ontologies Meeting at ISMB/ECCB 2009, 2009.
Taylor, I. W., R. Linding, D. Warde-Farley, Y. Liu, C. Pesquita, D. Faria, S. Bull, T. Pawson, Q. Morris, and J. L. Wrana, "Dynamic modularity in protein interaction networks predicts breast cancer outcome", Nature biotechnology, vol. 27, no. 2: Nature Publishing Group, pp. 199–204, 2009.
Pesquita, C., and F. Couto, GO where we need it to go: focused automated enrichment of the Gene Ontology. Student Council Symposium, : Student Council Symposium at ISMB/ECCB 2009, 2009.
Faria, D., C. Pesquita, F. Couto, and A. O. Falcao, "GOclasses: molecular function as viewed by proteins", The 12th Annual Bio-Ontologies, 2009.
Couto, F., T. Grego, C. Pesquita, and P. Verissimo, Handling self-citations using Google Scholar, : International Journal of Scientometrics, Informetrics and Bibliometrics, 2009.
Pesquita, C., T. Grego, and F. Couto, "Identifying Gene Ontology Areas for Automated Enrichment", Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living: Springer, pp. 934–941, 2009.
Pesquita, C., D. Faria, and F. Couto, "Measuring coherence between electronic and manual annotations in biological databases", Proceedings of the 2009 ACM symposium on Applied Computing: ACM, pp. 806–807, 2009.
Pesquita, C., D. Faria, A. O. Falcao, P. Lord, and F. Couto, "Semantic similarity in biomedical ontologies", PLoS computational biology, vol. 5, no. 7: Public Library of Science, pp. e1000443, 2009.
Pesquita, C., D. Faria, T. Grego, F. Couto, and M. J. Silva, "Untangling BioOntologies for Mining Biomedical Information", Handbook of research on text and Web mining technologies: Information Science Reference, 2009.
2008
Tavares, B., H. Bastos, D. Faria, J. Ferreira, T. Grego, C. Pesquita, and F. Couto, "The Biomedical Ontology Applications (BOA) framework", evaluation, vol. 9, no. S5, pp. S4, 2008.
Bastos, H., C. Pesquita, D. Faria, and A. O. Falcao, "BOLOS: BLAST & Ontology Linked-hOmologue Stars", Proceedings of the 2008 ACM symposium on Applied computing: ACM, pp. 1278–1281, 2008.
Couto, F., T. Grego, H. Bastos, C. Pesquita, R. Torres, P. Sánchez, L. Pascual, and C. Blaschke, "Identifying bioentity recognition errors of rule-based text-mining systems", Digital Information Management, 2008. ICDIM 2008. Third International Conference on: IEEE, pp. 733–738, 2008.
Pesquita, C., D. Faria, H. Bastos, A. Ferreira, A. O. Falcao, and F. Couto, "Metrics for GO based protein semantic similarity: a systematic evaluation", BMC bioinformatics, vol. 9, no. Suppl 5: BioMed Central Ltd, pp. S4, 2008.
Silva, M. J., F. Couto, T. Grego, D. Faria, and C. Pesquita, Untangling BioOntologies for Mining Biomedical Information, : Handbook of Research on Text and Web Mining Technologies, IGI Global Publishing, 2008.
2007
Pesquita, C., D. Faria, H. Bastos, A. O. Falcao, and F. Couto, "Evaluating gobased semantic similarity measures", Proc. 10th Annual Bio-Ontologies Meeting, vol. 2007, pp. 37–40, 2007.
Pesquita, C., D. Faria, H. Bastos, A. O. Falcao, and F. Couto, "Evaluating go-based semantic similarity measures", Proc. 10th Annual Bio-Ontologies Meeting, vol. 37, no. 40, pp. 38, 2007.
Pesquita, C., D. Faria, H. Bastos, A. O. Falcao, and F. Couto, "Evaluating GO-based Semantic Similarity Measures. ISMB/ECCB 2007 SIG Meeting Program Materials", International Society for Computational Biology, 2007.
Pesquita, C., Improving semantic similarity for proteins based on the gene ontology, , 2007.
Faria, D., C. Pesquita, F. Couto, and A. O. Falcao, Proteinon: A web tool for protein semantic similarity, : Department of Informatics, University of Lisbon, 2007.
Bastos, H., D. Faria, C. Pesquita, and A. O. Falcao, "Using GO terms to evaluate protein clustering", BioOntologies SIG at ISMB/ECCB-15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), 2007.