André Falcão

Conference Paper
Canato, S., AS. Carvalho, HM. Botelho, K. Aloria, R. Matthiesen, MD. Amaral, A. Falcao, and CM. Farinha, "Modulation of protein traffic networks to rescue F508del-CFTR from the endoplasmic reticulum", FEBS JOURNAL, vol. 284: WILEY 111 RIVER ST, HOBOKEN 07030-5774, NJ USA, pp. 297–298, 2017.
Conference Paper
Canato, S., J. Santos, A. Carvalho, M. Amaral, R. Matthiesen, A. Falcao, and C. Farinha, "ER quality control protein network in CF to modulate F508del-CFTR rescued", FEBS JOURNAL, vol. 283: WILEY-BLACKWELL 111 RIVER ST, HOBOKEN 07030-5774, NJ USA, pp. 138–138, 2016.
Canato, S., JD. Santos, AS. Carvalho, MD. Amaral, R. Matthiesen, A. Falcao, and CM. Farinha, "IDENTIFICATION OF PROTEIN FACTORS THAT REGULATE CFTR EXIT FROM THE ENDOPLASMIC RETICULUM", PEDIATRIC PULMONOLOGY, vol. 51: WILEY-BLACKWELL 111 RIVER ST, HOBOKEN 07030-5774, NJ USA, pp. 205–205, 2016.
Journal Article
Eduati, F., L. M. Mangravite, T. Wang, H. Tang, C. J. Bare, R. Huang, T. Norman, M. Kellen, M. P. Menden, J. Yang, et al., "Prediction of human population responses to toxic compounds by a collaborative competition", NATURE BIOTECHNOLOGY, vol. 33, pp. 933-U172, SEP, 2015.
Eduati, F., L. M. Mangravite, T. Wang, H. Tang, C. J. Bare, R. Huang, T. Norman, M. Kellen, M. P. Menden, J. Yang, et al., "Prediction of human population responses to toxic compounds by a collaborative competition", NATURE BIOTECHNOLOGY, vol. 33, pp. 933-U172, SEP, 2015.
Clarke, L. A., H. M. Botelho, L. Sousa, A. O. Falcao, and M. D. Amaral, "Transcriptome meta-analysis reveals common differential and global gene expression profiles in cystic fibrosis and other respiratory disorders and identifies CFTR regulators", GENOMICS, vol. 106, pp. 268-277, NOV, 2015.
Marques, AF., C. Rosset, J. Rasinmaki, H. Vacik, S. Gordon, S. Nobre, A. O. Falcao, D. Weber, M. Granitzer, and LO. Eriksson, "Collaborative development of a semantic wiki on forest management decision support", Scandinavian Journal of Forest Research, vol. 29, no. sup1: Taylor & Francis, pp. 30–43, 2014.
Siqueira, JM., TA. Paço, JC. Silvestre, FL. Santos, A. O. Falcao, and LS. Pereira, "Generating fuzzy rules by learning from olive tree transpiration measurement–An algorithm to automatize Granier sap flow data analysis", Computers and Electronics in Agriculture, vol. 101: Elsevier, pp. 1–10, 2014.
Book Chapter
Borges, J. G., J. Garcia-Gonzalo, S. Marques, V. A. Valdebenito, M. E. McDill, and A. O. Falcao, "Strategic Management Scheduling", The Management of Industrial Forest Plantations: Springer Netherlands, pp. 171–238, 2014.
Journal Article
Teixeira, A. L., and A. O. Falcao, "Structural similarity based kriging for quantitative structure activity and property relationship modeling", Journal of chemical information and modeling, vol. 54, no. 7: American Chemical Society, pp. 1833–1849, 2014.
Conference Paper
Duarte, C., L. Carriço, D. Costa, D. Costa, A. O. Falcao, and L. Tavares, "Welcoming gesture recognition into autism therapy", CHI'14 Extended Abstracts on Human Factors in Computing Systems: ACM, pp. 1267–1272, 2014.
Journal Article
Leal, J. P., A. O. Falcao, and A. L. Teixeira, Automated Identification and Classification of Stereochemistry: Chirality and Double Bond Stereoisomerism, , 2013.
Teixeira, A. L., J. P. Leal, and A. O. Falcao, "Automated Identification and Classification of Stereochemistry: Chirality and Double Bond Stereoisomerism", arXiv preprint arXiv:1303.1724, 2013.
Teixeira, A. L., and A. O. Falcao, "Noncontiguous atom matching structural similarity function", Journal of chemical information and modeling, vol. 53, no. 10: American Chemical Society, pp. 2511–2524, 2013.
Teixeira, A. L., J. P. Leal, and A. O. Falcao, "Random forests for feature selection in QSPR Models-an application for predicting standard enthalpy of formation of hydrocarbons.", J. Cheminformatics, vol. 5, pp. 9, 2013.
Teixeira, A. L., R. C. Santos, J. P. Leal, J. A. Martinho Simões, and A. O. Falcao, "ThermInfo: Collecting, Retrieving, and Estimating Reliable Thermochemical Data", arXiv preprint arXiv:1302.0710, 2013.
Martins, I. Filipa, A. L. Teixeira, L. Pinheiro, and A. O. Falcao, "A Bayesian approach to in silico blood-brain barrier penetration modeling", Journal of chemical information and modeling, vol. 52, no. 6: American Chemical Society, pp. 1686–1697, 2012.
Faria, D., A. Schlicker, C. Pesquita, H. Bastos, A. E. N. Ferreira, M. Albrecht, and A. O. Falcao, "Mining GO annotations for improving annotation consistency", PloS one, vol. 7, no. 7: Public Library of Science, pp. e40519, 2012.
Madureira, L., L. C. Nunes, J. G. Borges, and A. O. Falcao, "Assessing forest management strategies using a contingent valuation approach and advanced visualisation techniques: A Portuguese case study", Journal of Forest Economics, vol. 17, no. 4: Urban & Fischer, pp. 399–414, 2011.
Cieszewski, C. J., P. Bettinger, and A. O. Falcao, "The Conclusion of Perspectives on New Developments of Decision Support Systems for Sustainable Forest Management", Mathematical and Computational Forestry & Natural-Resource Sciences (MCFNS), vol. 3, no. 2, pp. Pages–73, 2011.
Zhang, H., M. Constantino, and A. O. Falcao, "Modeling forest core area with integer programming", Annals of Operations Research, vol. 190, no. 1: Springer US, pp. 41–55, 2011.
Bettinger, P., C. J. Cieszewski, and A. O. Falcao, "Perspectives on New Developments of Decision Support Systems for Sustainable Forest Management", Mathematical and Computational Forestry & Natural-Resource Sciences (MCFNS), vol. 3, no. 1, pp. Pages–15, 2011.
Pesquita, C., D. Faria, A. O. Falcao, P. Lord, F. Couto, and , "Semantic Similarities in Biomedical Ontologies", IMIA Yearbook, vol. 5, pp. 84–84, 2010.
Conference Paper
Langlois, T., T. Chambel, E. Oliveira, P. Carvalho, G. Marques, and A. O. Falcao, "VIRUS: video information retrieval using subtitles", Proceedings of the 14th International Academic MindTrek Conference: Envisioning Future Media Environments: ACM, pp. 197–200, 2010.
Journal Article
Faria, D., A. E. N. Ferreira, and A. O. Falcao, "Enzyme classification with peptide programs: a comparative study", BMC bioinformatics, vol. 10, no. 1: BioMed Central Ltd, pp. 231, 2009.
Faria, D., C. Pesquita, F. Couto, and A. O. Falcao, "GOclasses: molecular function as viewed by proteins", The 12th Annual Bio-Ontologies, 2009.
Pesquita, C., D. Faria, A. O. Falcao, P. Lord, and F. Couto, "Semantic similarity in biomedical ontologies", PLoS computational biology, vol. 5, no. 7: Public Library of Science, pp. e1000443, 2009.
Loff, J. F., M. Palahí, A. O. Falcao, H. Martins, and J. G. Borges, "Addressing sustainability concerns in Mediterranean forest ecosystem management", MEDFOREX Program, Forest Technology Centre of Catalonia, pp. 1–9, 2008.
Conference Paper
Bastos, H., C. Pesquita, D. Faria, and A. O. Falcao, "BOLOS: BLAST & Ontology Linked-hOmologue Stars", Proceedings of the 2008 ACM symposium on Applied computing: ACM, pp. 1278–1281, 2008.
Journal Article
Pesquita, C., D. Faria, H. Bastos, A. Ferreira, A. O. Falcao, and F. Couto, "Metrics for GO based protein semantic similarity: a systematic evaluation", BMC bioinformatics, vol. 9, no. Suppl 5: BioMed Central Ltd, pp. S4, 2008.
Conference Paper
Falcao, A. O., D. Faria, and A. Ferreira, "Peptide programs: applying fragment programs to protein classification", Proceedings of the 2nd international workshop on Data and text mining in bioinformatics: ACM, pp. 37–44, 2008.
Book Chapter
Falcao, A. O., "Visualization in the Design of Forested Landscapes", Designing Green Landscapes: Springer Netherlands, pp. 245–263, 2008.
Journal Article
Pesquita, C., D. Faria, H. Bastos, A. O. Falcao, and F. Couto, "Evaluating go-based semantic similarity measures", Proc. 10th Annual Bio-Ontologies Meeting, vol. 37, no. 40, pp. 38, 2007.
Pesquita, C., D. Faria, H. Bastos, A. O. Falcao, and F. Couto, "Evaluating gobased semantic similarity measures", Proc. 10th Annual Bio-Ontologies Meeting, vol. 2007, pp. 37–40, 2007.
Pesquita, C., D. Faria, H. Bastos, A. O. Falcao, and F. Couto, "Evaluating GO-based Semantic Similarity Measures. ISMB/ECCB 2007 SIG Meeting Program Materials", International Society for Computational Biology, 2007.
Faria, D., C. Pesquita, F. Couto, and A. O. Falcao, Proteinon: A web tool for protein semantic similarity, : Department of Informatics, University of Lisbon, 2007.
Martins, F., A. O. Falcao, and F. Couto, Semantic Similarity Match for Data Quality, : Department of Informatics, University of Lisbon, 2007.
Bastos, H., D. Faria, C. Pesquita, and A. O. Falcao, "Using GO terms to evaluate protein clustering", BioOntologies SIG at ISMB/ECCB-15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), 2007.
Falcao, A. O., Addressing the computational complexity of harvest scheduling problems for short rotation species: Heuristics or Integer Programming?, : International Conference of Interdisciplinary Mathematical & Statistical Techniques, 2006.
Falcao, A. O., T. Langlois, and A. Wichert, "Flexible kernels for RBF networks", Neurocomputing, vol. 69, no. 16: Elsevier, pp. 2356–2359, 2006.
Falcao, A. O., M. Próspero Santos, and J. G. Borges, "A real-time visualization tool for forest ecosystem management decision support", Computers and electronics in agriculture, vol. 53, no. 1: Elsevier, pp. 3–12, 2006.
Teles, J., J. Cavaleiro, P. Weinman, A. O. Falcao, P. Fernandes, and JE. Fonseca, RheugulationDB: building an integrated view on Rheumatoid Artritis, : European Congress of Rheumatology, 2006.
Teles, J., J. Cavaleiro, P. Weinman, A. O. Falcao, P. Fernandes, and JE. Fonseca, RheugulationDB: Construindo uma imagem integrada para a artrite reumatóide, : XIII Congresso Português de Reumatologia, 2006.
Falcao, A. O., and J. G. Borges, "Designing decision support tools for Mediterranean forest ecosystems management: a case study in Portugal", Annals of Forest Science, vol. 62, no. 7: EDP Sciences, pp. 751–760, 2005.
Borges, J. Guilherme, P. Soares, M. Tome, J. Tomé, J. Santos Pereira, S. Barreiro, A. O. Falcao, C. Araújo, J. Pedro Pina, L. Lemos, et al., Modelação da sustentabilidade da produção de madeira e do armazenamento de carbono de eucaliptais ao n{ível da unidade de gestão, : SPCF, 2005.
Falcao, A. O., "Residue fragment programs for enzyme classification", Proceedings of the workshop Bioinformatics: Knowledge Discovery in Biology, pp. 24–28, 2005.
Falcao, A. O., "{Integração de um visualizador interactivo de paisagens florestais num sistema de apoio á decisão em gestão de recursos naturais–aplicação á Serra da Lousã", Silva Lusitana. Nº Especial, pp. 89–102, 2004.
Falcao, A. O., and M. Próspero Santos, Representação de Paisagens Florestais Adequada á Navegação para Áreas de Grande Dimensão, , 2004.
Book Chapter
Falcao, A. O., and J. Guilherme Borges, "Comparison of Heuristics for Spatially Constrained Natural Resource Management Problems", Systems Analysis in Forest Resources: Springer Netherlands, pp. 269–277, 2003.
Borges, J. G., A. O. Falcao, C. Miragaia, P. Marques, and M. Marques, "A decision support system for forest ecosystem management in Portugal", Systems Analysis in Forest Resources: Springer Netherlands, pp. 155–163, 2003.
Journal Article
Falcao, A. O., and J. Guilherme Borges, "MANAGEMENT PROBLEMS", Managing Forest Ecosystems, pp. 269, 2003.
Falcao, A. O., and J. Borges, "Combining random and systematic search heuristic procedures for solving spatially constrained forest management scheduling models", Forest Science, vol. 48, no. 3: Society of American Foresters, pp. 608–621, 2002.
Book Chapter
Borges, J. G., H. M. Hoganson, and A. O. Falcao, "Heuristics in multi-objective forest management", Multi-objective forest planning: Springer Netherlands, pp. 119–151, 2002.
Book
Falcao, A. O., and JG. Borges, SAGfLOR 2.0-Simulador de Alternativas de Gestão. Manual de Utilização, : Grupo de Economia e Planeamento em Recursos Florestais, Documento nº5, DEF, Lisboa, 1999.
Journal Article
Borges, JG., and A. O. Falcao, "SagFlor, a simulator of management alternatives in forest ecosystems", Revista Florestal (Portugal), 1999.
Falcao, A. O., JG. Borges, and M. Tomé, "SAGfLOR–An automated forest management prescription writer", Modelling the Growth of Tree Plantations and Agroforestry Systems in South and East Africa, University of Joensuu, Faculty of Forestry Research Notes, vol. 97, pp. 211–218, 1999.
Miragaia, C., JG. Borges, A. O. Falcao, and M. Tome, "InFlor, a management information system in forest resources", Modelling the growth of tree plantations and agroforestry systems in South and East Africa, University of Joensuu, Faculty of Forestry Research Notes, vol. 80, pp. 131–142, 1998.
Falcao, A. O., "DUNAS–A growth model for the National Forest of Leiria", Empirical and process-based models for forest tree and stand growth simulation, pp. 20–26, 1997.
Tomé, M., A. O. Falcao, and A. Amaro, "Globulus V1. 0.0: A regionalised growth model for Eucalypt plantations in Portugal", Proceedings of the IUFRO Conference: Modelling growth of fast-grown tree species, pp. 138–145, 1997.
Tomé, M., A. O. Falcao, A. Carvalho, and A. Amaro, "A global growth model for eucalypt plantations in Portugal", Lesnictvi-UZPI (Czech Republic), 1995.