Publications

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Conference Paper
Ferrnandes, J., J. P. Arrais, N. F. Azevedo, E. Balsa-Canto, J. R. Banga, P. Barbosa, C. A. C. Bastos, C. Bernon, S. Bongard, L. Borrajo, et al., "ElGokhy, Sherin M. 31 Estévez, Carlos 9 Fdez-Riverola, Florentino 49, 269 Ferreira, João 253", 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014), vol. 294: Springer, pp. 293, 2014.
Barbosa, P., O. Dias, J. P. Arrais, and M. Rocha, "Metagenomic Analysis of the Saliva Microbiome with Merlin", 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014): Springer, pp. 191–199, 2014.
Journal Article
Meireles, B., A. Usié, P. Barbosa, A. Margarida Fortes, A. Folgado, I. Chaves, I. Carrasquinho, R. Lourenço Costa, S. Gonçalves, R. Teresa Teixeira, et al., "Characterization of the cork formation and production transcriptome in Quercus cerris$\times$ suber hybrids", Physiology and molecular biology of plants, vol. 24, no. 4: Springer, pp. 535–549, 2018.
Capote, T., P. Barbosa, A. Usié, A. Marcos Ramos, V. Inácio, R. Ordás, S. Gonçalves, and L. Morais-Cecílio, "ChIP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber)", BMC plant biology, vol. 18, no. 1: BioMed Central, pp. 198, 2018.
Usié, A., F. Simões, P. Barbosa, B. Meireles, I. Chaves, S. Gonçalves, A. Folgado, M. H. Almeida, J. Matos, and A. M. Ramos, "Comprehensive analysis of the cork oak (Quercus suber) transcriptome involved in the regulation of bud sprouting", Forests, vol. 8, no. 12: Multidisciplinary Digital Publishing Institute, pp. 486, 2017.
Stervander, M., J. Carlos Illera, L. Kvist, P. Barbosa, N. P. Keehnen, P. Pruisscher, S. Bensch, and B. Hansson, "Disentangling the complex evolutionary history of the Western Palearctic blue tits (Cyanistes spp.)–phylogenomic analyses suggest radiation by multiple colonization events and subsequent isolation", Molecular ecology, vol. 24, no. 10: Wiley Online Library, pp. 2477–2494, 2015.
Barbosa, P., C. Leão, A. Usié, A. Amaro, A. Botelho, C. Pinto, J. Inácio, K. Stevenson, and A. Marcos Ramos, "Draft genome sequence of a rare pigmented Mycobacterium avium subsp. paratuberculosis Type C strain", Genome announcements, vol. 5, no. 41: Am Soc Microbiol, pp. e01066–17, 2017.
Ramos, A. Marcos, A. Usié, P. Barbosa, P. M. Barros, T. Capote, I. Chaves, F. Simões, I. Abreu, I. Carrasquinho, C. Faro, et al., "The draft genome sequence of cork oak", Scientific data, vol. 5: Nature Publishing Group, pp. 180069, 2018.
Ferrnandes, J., J. P. Arrais, NF. Azevedo, E. Balsa-Canto, J. R. Banga, P. Barbosa, C. A. C. Bastos, C. Bernon, S. Bongard, L. Borrajo, et al., "ElGokhy, Sherin M. 31 Estévez, Carlos 9 Fdez-Riverola, Florentino 49, 269 Ferreira, João 253", Julio Sáez-Rodr{íguez Miguel P. Rocha Florentino Fdez-Riverola, pp. 293, 2014.
Gaspar, D., C. Trindade, A. Usié, B. Meireles, P. Barbosa, A. M. Fortes, C. Pesquita, R. L. Costa, and A. M. Ramos, "Expression profiling in Pinus pinaster in response to infection with the pine wood nematode Bursaphelenchus xylophilus", Forests, vol. 8, no. 8: Multidisciplinary Digital Publishing Institute, pp. 279, 2017.
Gaspar, D., C. Trindade, A. Usié, B. Meireles, P. Barbosa, A. M. Fortes, C. Pesquita, R. L. Costa, and A. M. Ramos, "Expression Profiling in Pinus pinaster in Response to Infection with the Pine Wood Nematode Bursaphelenchus xylophilus", Forests, vol. 8, no. 8: Multidisciplinary Digital Publishing Institute, pp. 279, 2017.
Thesis
Barbosa, P. Santos, Taxonomic and functional analysis of metagenomes, , 2013.