Publications

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2006
Freitas, S., A. Paula Afonso, and M. J. Silva, Geotumba móvel: motor de busca geográfico para dispositivos móveis, : Conference on Mobile and Ubiquitous Systems, 2006.
Couto, F., M. J. Silva, V. Lee, E. Dimmer, E. Camon, R. Apweiler, H. Kirsch, and D. Rebholz-Schuhmann, "GOAnnotator: linking protein GO annotations to evidence text", Journal of Biomedical Discovery and Collaboration, vol. 1, no. 1: BioMed Central Ltd, pp. 19, 2006.
Verissimo, P., J. Arlat, A. Bondavalli, and B. Haverkort, "Guest Editorial for the Special Issue on the 2005 IEEE/IFIP Conference on Dependable Systems and Networks, including the Dependable Computing and Communications and Performance and Dependability Symposia", IEEE Transactions on Dependable and Secure Computing, vol. 3, no. 3: IEEE Computer Society, pp. 0169–171, 2006.
de Sá, M., and L. Carriço, "Handheld devices for cooperative educational activities", Proceedings of the 2006 ACM symposium on Applied computing: ACM, pp. 1145–1149, 2006.
Martins, B., M. J. Silva, S. Freitas, and A. Paula Afonso, "Handling Locations in Search Engine Queries.", GIR, vol. 6, pp. 1–6, 2006.
Wichert, A., and M. J. Silva, Hierarchical linear subspace indexing method, : Department of Informatics, University of Lisbon, 2006.
Obelheiro, R. R., A. Neves Bessani, C. L Lung, and M. Correia, How practical are intrusion-tolerant distributed systems?, : Department of Informatics, University of Lisbon, 2006.
Chambel, T., C. Zahn, and M. Finke, "Hypervideo and cognition: Designing video-based hypermedia for individual learning and collaborative knowledge building", Cognitively Informed Systems: Utilizing Practical Approaches to Enrich Information Presentation and Transfert, pp. 26–49, 2006.
Arlat, J., A. Bondavalli, BRHM. Haverkort, and P. Verissimo, IEEE Transactions on Dependable and Secure Computing, : IEEE Computer Society, 2006.
Andrade, L., and M. J. Silva, "Indexing Structures for Geographic Web Retrieval", Proceedings of the Conference on Mobile and Ubiquitous Systems (CSMU'06), Guimarães, Portugal, 2006.
Favarim, F., G. Santos, M. Correia, and , An Infrastructure for Adaptive Fault Tolerance on FT-CORBA, : 9th IEEE International Symposium on Object and component-oriented Real-time distributed Computing, 2006.
L Lung, C., F. Favarim, G. Santos Veronese, and M. Correia, "An infrastructure for adaptive fault tolerance on FT-CORBA", Object and Component-Oriented Real-Time Distributed Computing, 2006. ISORC 2006. Ninth IEEE International Symposium on: IEEE, pp. 8–pp, 2006.
Rufino, J., P. Verissimo, C. Almeida, and G. Arroz, "Integrating inaccessibility control and timer management in canely", Emerging Technologies and Factory Automation, 2006. ETFA'06. IEEE Conference on: IEEE, pp. 348–355, 2006.
Chambel, T., J. N Nunes, T. Romão, and C. J Campos, Interacção 2006-Actas da 2ª. Conferência Nacional em Interacção Pessoa-Máquina, , 2006.
Almeida, C., and J. Rufino, "Interconnected embedded systems: Challenges and main problems to solve", In Proceedings of the 6th IEEE International Workshop on Factory Communication Systems (Work in Progress Sessions), Torino, Italy, 2006.
Guerraoui, R., and L. Rodrigues, Introduction to reliable distributed programming, : Springer Science & Business Media, 2006.
Verissimo, P., N. Ferreira Neves, C. Cachin, J. Poritz, D. Powell, Y. Deswarte, R. Stroud, and I. Welch, "Intrusion-tolerant middleware: The road to automatic security", Security & Privacy, IEEE, vol. 4, no. 4: IEEE, pp. 54–62, 2006.
Guimarães, N., P. Kommers, T. Chambel, and , iTV Model: An HCI Based Model for the Planning, Development and Evaluation of iTV Applications, : International Conference on Signal Processing and Multimedia Applications, 2006.
Maia, B., A. Frankenber Garcia, M. J. Silva, P. Gomes, M. Cabral, A. Silva, S. Inácio, A. Sofia Pinto, L. Costa, P. Rocha, et al., Linguateca: seven years working for the computational processing of Portuguese, , 2006.
Neves, N. Ferreira, "Locating file processing vulnerabilities", Fast abstract in Supplement of the Int. Conf. on Dependable Systems and Networks, 2006.
de Sá, M., and L. Carriço, "Low-fi prototyping for mobile devices", CHI'06 extended abstracts on Human factors in computing systems: ACM, pp. 694–699, 2006.
Azevedo, NF., C. Almeida, N. Guimarães, CW. Keevil, and MJ. Vieira, Maintenance of spiral morphology and formation of biofilms on copper surfaces by water-exposed Helicobacter pylori, , 2006.
Gomes, D., A. L. Santos, and M. J. Silva, "Managing duplicates in a web archive", Proceedings of the 2006 ACM symposium on Applied computing: ACM, pp. 818–825, 2006.
Couto, F., and M. J. Silva, "Mining BioLiterature: Toward Automatic", Advanced Data Mining Technologies in Bioinformatics: IGI Global, pp. 283, 2006.
Silva, M. J., and F. Couto, Mining the BioLiterature: towards automatic annotation of genes and proteins, : Advanced Data Mining Technologies in Bioinformatics, Idea Group IncIdea Group Inc, 2006.
Carriço, L., M. de Sá, and P. Antunes, "Mobile devices for active psychotherapy", Proceedings of the 8th Int. Conference on Enterprise Information Systems, Paphos, Cyprus, 2006.
Freitas, S., A. Paula Afonso, and M. J. Silva, "Mobile Geotumba: Geographic information retrieval system for mobile devices", Proc. of the 4th MiNEMA Workshop, Sintra, Portugal (July, 2-3 2006), pp. 83–87, 2006.
Santos, A. L., K. Koskimies, and A. Lopes, "A model-driven approach to variability management in product-line engineering", Nordic Journal of Computing, vol. 13, no. 3, pp. 196, 2006.
Gomes, D., and M. J. Silva, "Modelling information persistence on the web", Proceedings of the 6th international conference on Web engineering: ACM, pp. 193–200, 2006.
Santos, A. L., A. Lopes, K. Koskimies, and , "Modularizing framework hot-spots using aspects", In Proceedings of the 11th Spanish Conference on Software Engineering and Databases: Citeseer, 2006.
Henriques, N. A. C., N. Correia, J. Manzolli, L. Correia, and T. Chambel, "MovieGene: Evolutionary video production based on genetic algorithms and cinematic properties", Applications of Evolutionary Computing: Springer Berlin Heidelberg, pp. 707–711, 2006.
Rodrigues, M., L. Carriço, C. Duarte, N. Guimarães, A. Serralheiro, and I. Trancoso, "New Ways to Read Digital Talking Books", Proceedings of the IADIS International Applied Computing Conference, San Sebastian, Spain: Citeseer, 2006.
Martins, B., M. Chaves, and M. J. Silva, "O sistema CaGE para Reconhecimento de referências geográficas em textos na l{íngua portuguesa", quot; Encontro do HAREM (Porto Portugal 15 de Julho de 2006), 2006.
Silva, M. J., "Ontologias & Terminologias: Perspectivas da engenharia", quot; Material de ensino na Primeira Escola de Verão da Linguateca (UP Porto Portugal 10-14 Julho de 2006), 2006.
Lopes, R., and L. Carriço, "Patterns for Time-based Hypermedia Artifacts.", EuroPLoP, pp. 247–276, 2006.
Carreira, P. J. F., H. Galhardas, J. Pereira, F. Martins, and M. J. Silva, Performance Analysis of One-to-Many Data Transformations, : Department of Informatics, University of Lisbon, 2006.
Pombinho, P., and A. Paula Afonso, "Pesquisa de Imagens na Web: estudo de Usabilidade", 2nd National Conference in Human Computer Interaction, pp. 167–175, 2006.
Rosa, L., A. Lopes, and L. Rodrigues, "Policy-driven adaptation of protocol stacks", Autonomic and Autonomous Systems, 2006. ICAS'06. 2006 International Conference on: IEEE, pp. 5–5, 2006.
Miranda, H., S. Leggio, L. Rodrigues, and K. Raatikainen, "A power-aware broadcasting algorithm", Personal, Indoor and Mobile Radio Communications, 2006 IEEE 17th International Symposium on: IEEE, pp. 1–5, 2006.
Carriço, L., M. de Sá, and P. Antunes, "Proactive Psychotherapy with Handheld Devices.", ICEIS (5), pp. 27–34, 2006.
Sousa, P., "Proactive resilience", Sixth European Dependable Computing Conference (EDCC-6) Supplemental Volume, pp. 27–32, 2006.
Sousa, P., N. Ferreira Neves, P. Verissimo, and W. H. Sanders, "Proactive resilience revisited: The delicate balance between resisting intrusions and remaining available", Reliable Distributed Systems, 2006. SRDS'06. 25th IEEE Symposium on: IEEE, pp. 71–82, 2006.
Sousa, P., N. Ferreira Neves, and P. Verissimo, "Proactive resilience through architectural hybridization", Proceedings of the 2006 ACM symposium on Applied computing: ACM, pp. 686–690, 2006.
Bessani, A. Neves, E. Adılio Pe Alchieri, M. Correia, J. da Silva Fraga, and C. L Lung, "Provendo confidencialidade em espaços de tuplas tolerantes a intrusoes", Anais do 6o Simpósio Brasileiro em Segurança da Informaç ao e de Sistemas Computacionais-SBSeg 2006, 2006.
Ferreira, A., and P. Antunes, "Quantitative evaluation of workspace collaboration", CSCWD: 10th international conference on Computer supported cooperative work in design: IEEE, pp. 1065–1070, 2006.
Ferreira, A., and P. Antunes, "Quantitative Evaluation of Workspace Collaboration.", CSCWD, vol. 6, pp. 1–6, 2006.
Denysyuk, O., and L. Rodrigues, "Random walk on directed dynamic graphs", Arxiv preprint, 2006.
Moniz, H., N. Ferreira Neves, M. Correia, and P. Verissimo, "Randomized intrusion-tolerant asynchronous services", Dependable Systems and Networks, 2006. DSN 2006. International Conference on: IEEE, pp. 568–577, 2006.
Falcao, A. O., M. Próspero Santos, and J. G. Borges, "A real-time visualization tool for forest ecosystem management decision support", Computers and electronics in agriculture, vol. 53, no. 1: Elsevier, pp. 3–12, 2006.
Couto, F., ReBIL: Relating Biological Information through Literature, : Tese de Doutoramento, Faculdade de Ciências, Departamento de Informática, Universidade de Lisboa, 2006.
Mocito, J., and L. Rodrigues, "Reconfigurable architecture for group communication support in hybrid networks", workshop in Sintra, pp. 33, 2006.
Carvalho, N., F. Araujo, and L. Rodrigues, "Reducing latency in rendezvous-based publish-subscribe systems for wireless ad hoc networks", Distributed Computing Systems Workshops, 2006. ICDCS Workshops 2006. 26th IEEE International Conference on: IEEE, pp. 28–28, 2006.
Andrade, L., and M. J. Silva, "Relevance Ranking for Geographic IR.", GIR, 2006.
Guerraoui, R., and L. Rodrigues, "Reliable Broadcast", Introduction to Reliable Distributed Programming: Springer Berlin Heidelberg, pp. 69–134, 2006.
Carvalho, N., F. Araújo, and L. Rodrigues, Rendezvous-Based Publish-SuLicribe Systems for Wireless Ad Hoc Networks, : 5th International Workshop on Distributed Event-Based Systems (DEBS), 2006.
Sousa, P., N. Ferreira Neves, A. Lopes, and P. Verissimo, "On the resilience of intrusion-tolerant distributed systems", DI/FCUL TR 06–14, DEP. OF INFORMATICS, UNIV. OF LISBON, SEPTEMBER 2006.–PRELIMINARY ARCHITECTURE SPECIFICATION PAGE 100, 2006.
Neves, N. Ferreira, P. Verissimo, P. Sousa, and A. Lopes, On the Resilience of Intrusion-Tolerant Distributed Systems, : Department of Informatics, University of Lisbon, 2006.
Casimiro, A., A. Bondavalli, H-P. Schwefel, M. Calha, M. Clemetsen, A. Daidone, M. Dixit, Z. Egel, L. Falai, F. Di Giandomenico, et al., Resilient architecture: HIDENETS D2. 1.2, , 2006.
Teles, J., J. Cavaleiro, P. Weinman, A. O. Falcao, P. Fernandes, and JE. Fonseca, RheugulationDB: building an integrated view on Rheumatoid Artritis, : European Congress of Rheumatology, 2006.
Teles, J., J. Cavaleiro, P. Weinman, A. O. Falcao, P. Fernandes, and JE. Fonseca, RheugulationDB: Construindo uma imagem integrada para a artrite reumatóide, : XIII Congresso Português de Reumatologia, 2006.
Lopes, R., C. Duarte, H. Simões, and L. Carriço, On the road to Rich Digital Books, : 2nd National Conference in Human Computer Interaction, 2006.
Mocito, J., and L. Rodrigues, "Run-time switching between total order algorithms", Euro-Par 2006 Parallel Processing: Springer Berlin Heidelberg, pp. 582–591, 2006.
de Sá, M., L. Carriço, L. Duarte, D. Cruz, and C. Torres, ScWiz: Personalizing Psychotherapy, : 2nd National Conference in Human Computer Interaction, 2006.
Guerraoui, R., and L. Rodrigues, "Shared Memory", Introduction to Reliable Distributed Programming: Springer Berlin Heidelberg, pp. 135–188, 2006.
Leggio, S., H. Miranda, K. Raatikainen, and L. Rodrigues, "SIPCache: A distributed SIP location service for mobile ad-hoc networks", Mobile and Ubiquitous Systems: Networking & Services, 2006 Third Annual International Conference on: IEEE, pp. 1–4, 2006.
Graça, A. Silva, A. Pelman, A. Borghini, A. Bergqvist, A. Lever, A. Hatzimoysis, A. Branco, \AA. Maria Wikforss, A. Á. lvarez, B. Hill IHPST, et al., "Speakers' List", Book of Abstracts ENFA-3: Instituto de Filosofia da Linguagem, Universidade Nova de Lisboa, pp. 86, 2006.
Pinto, R., J. Rufino, and C. Almeida, Specification and engineering of the CANELy prototype board, : Technical Report DARIO Technical Report RT-06-06, Instituto Superior Tecnico, Lisbon, Portugal, 2006.
Trancoso, I., C. Duarte, A. Joaquim Serralheiro, D. Caseiro, L. Carriço, and C. Viana, "Spoken language technologies applied to digital talking books.", INTERSPEECH, 2006.
Mocito, J., A. Respicio, and L. Rodrigues, On statistically estimated optimistic delivery in large-scale total order protocols, : 12th IEEE International Symposium Pacific Rim Dependable, 2006.
Mocito, J., A. Respicio, and L. Rodrigues, "On statistically estimated optimistic delivery in wide-area total order protocols", Dependable Computing, 2006. PRDC'06. 12th Pacific Rim International Symposium on: IEEE, pp. 202–209, 2006.
Martinho, R., D. Domingos, and A. Rito-Silva, Supporting authentication requirements in workflows, : 8th International Conference on Enterprise Information Systems, 2006.
Carriço, L., M. de Sá, L. Duarte, and T. Reis, Supporting Group Analysis in Psychotherapy, : 2nd National Conference in Human Computer Interaction, 2006.
Araujo, F., and L. Rodrigues, Survey on Distributed Hash Tables, : University of Lisbon, 2006.
Araujo, F., and L. Rodrigues, Survey on Position-Based Routing1, , 2006.
Antunes, P., and , A Technique for Evaluating Shared Workspaces Efficiency, : 10th International Conference Computer Supported Cooperative Work in Design 3, 2006.
Verissimo, P., "Thou shalt not trust non-trustworthy systems", Distributed Computing Systems Workshops, 2006. ICDCS Workshops 2006. 26th IEEE International Conference on: IEEE, pp. xxxviii–xxxviii, 2006.
Bessani, A. Neves, M. Correia, J. da Silva Fraga, and C. L Lung, Towards a dependable tuple space, : Department of Informatics, University of Lisbon, 2006.
Pereira, J., N. Carvalho, and L. Rodrigues, Towards a generic group communication service, : Springer, 2006.
Carvalho, N., J. Pereira, and L. Rodrigues, "Towards a generic group communication service", On the Move to Meaningful Internet Systems 2006: CoopIS, DOA, GADA, and ODBASE: Springer Berlin Heidelberg, pp. 1485–1502, 2006.
Verissimo, P., "Travelling through wormholes: a new look at distributed systems models", ACM SIGACT News, vol. 37, no. 1: ACM, pp. 66–81, 2006.
Miranda, H., and L. Rodrigues, "A two-side perspective on cooperation in mobile ad hoc networks", Proceedings of the conference on mobile and ubiquitous systems. Escola de Engenharia-Universidade do Minho, Guimaraes, Portugal: Citeseer, pp. 109–118, 2006.
Rodrigues, C., M. Chaves, and M. J. Silva, "Uma representação ontológica da geografia f{ísica de Portugal", IX Encontro de Utilizadores de Informação Geográfica, ESIG-Oeiras, Portugal, 2006.
Radimirsch, M., E. V. Matthiesen, G. Huszerl, M. Reitenspieß, M. Kaaniche, I. Einar Svinnset, A. Casimiro, L. Falai, HIDENETS. Consortium, and , "Use case scenarios and preliminary reference model", EU FP6 IST project HIDENETS, deliverable D, vol. 1, 2006.
Antunes, P., C. J. Costa, and J. Alberto Pi Urtubia, The use of genre analysis in the design of electronic meeting systems, : UNIV SHEFFIELD DEPT INFORMATION STUDIES, 2006.
Neves, N. Ferreira, J. Antunes, M. Correia, P. Verissimo, and R. Neves, "Using attack injection to discover new vulnerabilities", Dependable Systems and Networks, 2006. DSN 2006. International Conference on: IEEE, pp. 457–466, 2006.
Couto, F., M. J. Silva, and P. M. Coutinho, "Validating associations in biological databases", Proceedings of the 15th ACM international conference on Information and knowledge management: ACM, pp. 142–151, 2006.
Coutinho, M., C. Almeida, and J. Rufino, "VITRAL-A text mode window manager for real-time embedded kernels.", ETFA, pp. 1254–1260, 2006.
Gomes, D., and M. J. Silva, The Viuva Negra crawler, : Department of Informatics, University of Lisbon, 2006.
Pereira, J., R. Oliveira, and L. Rodrigues, "Workshop on Reliability in Decentralized Distributed Systems (RDDS)-Distributed Algorithms-Efficient Epidemic Multicast in Heterogeneous Networks", Lecture Notes in Computer Science, vol. 4278: Berlin: Springer-Verlag, 1973-, pp. 1520–1529, 2006.
Ramalho, J. Carlos, J. Correia Lopes, A. Simões, and , XATA 2006: XML: aplicações e tecnologias associadas, , 2006.
Cardoso, N., B. Martins, M. Chaves, L. Andrade, and M. J. Silva, "The XLDB group at GeoCLEF 2005", Accessing Multilingual Information Repositories: Springer Berlin Heidelberg, pp. 997–1006, 2006.
Cardoso, N., L. Andrade, A. Simões, and M. J. Silva, "The XLDB group at the CLEF 2005 ad-hoc task", Accessing Multilingual Information Repositories: Springer Berlin Heidelberg, pp. 54–60, 2006.
2005
Ferreira, A., and P. Antunes, Analytical Evaluation of Groupware Usability in Concerted Work Scenarios, : Department of Informatics, University of Lisbon, 2005.
Antunes, P., M. Borges, J. A. Pino, and L. Carriço, "Analyzing groupware design by means of usability results", Computer Supported Cooperative Work in Design, 2005. Proceedings of the Ninth International Conference on, vol. 1: IEEE, pp. 283–288, 2005.
Lopes, R., and L. Carriço, "APP-Architecture for Pipelined Processing", IADIS International Conference WWW/Internet, vol. 2005, 2005.
Formella, A., F. Couto, JS. Silva, and P. Fernandes, "Approximate point set match for partial protein structure alignment", Proceedings of Bioinformatics: Knowledge Discovery in Biology (BKDB2005). Facultade Ciencias Lisboa da Universidade de Lisboa, pp. 53–57, 2005.
Diniz, N., and J. Rufino, ARINC 653 In Space Dasia 2005, EUROSPACE, Edinburgh, Scotland, , 2005.
Guimarães, N., As naturezas lingu{ísticas dos sistemas computacionais, : Universidade Aberta, 2005.
Martins, B., M. Chaves, and M. J. Silva, "Assigning geographical scopes to web pages", Advances in Information Retrieval: Springer Berlin Heidelberg, pp. 564–567, 2005.
Jones, C., D. Lomet, A. Romanovsky, G. Weikum, A. Fekete, M-C. Gaudel, H. F. Korth, R. de Lemos, E. Moss, R. Rajwar, et al., "The atomic manifesto: a story in four quarks", ACM SIGMOD Record, vol. 34, no. 1: ACM, pp. 63–69, 2005.

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