Publications

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2017
Couto, F. M., L. Campos, and A. Lamurias, "MER: a minimal named-entity recognition tagger and annotation server", Proceedings of the BioCreative, Conference: BeCalm challenge evaluation workshop (Biocreative V.5), at Barcelona, Spain, vol. 5, 2017.
Inácio, B., J. D. Ferreira, and F. M. Couto, "Metadata Analyser: measuring metadata quality", International Conference on Practical Applications of Computational Biology & Bioinformatics: Springer, pp. 197–204, 2017.
Marques-Silva, J., M. Janota, and C. Mencía, "Minimal sets on propositional formulae. Problems and reductions", Artificial Intelligence, vol. 252: Elsevier, pp. 22–50, 2017.
Ignatiev, A., A. Morgado, and J. Marques-Silva, "Model Based Diagnosis of Multiple Observations with Implicit Hitting Sets", arXiv preprint arXiv:1707.01972, 2017.
Passier, R., "Modelling and drug screening for cardiovascular disease Authors' Index", ACTA PHYSIOLOGICA, vol. 219: WILEY 111 RIVER ST, HOBOKEN 07030-5774, NJ USA, pp. 7–7, 2017.
Martins, F., and D. Domingos, "Modelling IoT behaviour within BPMN Business Processes", Procedia Computer Science, vol. 121: Elsevier, pp. 1014–1022, 2017.
Canato, S., AS. Carvalho, HM. Botelho, K. Aloria, R. Matthiesen, MD. Amaral, A. Falcao, and CM. Farinha, "Modulation of protein traffic networks to rescue F508del-CFTR from the endoplasmic reticulum", FEBS JOURNAL, vol. 284: WILEY 111 RIVER ST, HOBOKEN 07030-5774, NJ USA, pp. 297–298, 2017.
Rodrigues, M. J., and F. M. Couto, "MoRS at SemEval-2017 task 3: Easy to use SVM in ranking tasks", Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval-2017), pp. 287–291, 2017.
Campos, L., and F. Couto, "MRA-Proof of Concept of a Multilingual Report Annotator Web Application", arXiv preprint arXiv:1704.01748, 2017.
Schnelle-Walka, D., C. Duarte, and S. Radomski, "Multimodal Fusion and Fission within the W3C MMI Architectural Pattern", Multimodal Interaction with W3C Standards: Springer, pp. 393–415, 2017.
2016
Ignatiev, A., A. Morgado, J. Planes, and J. Marques-Silva, "Maximal falsifiability", AI Communications, vol. 29, no. 2: IOS Press, pp. 351–370, 2016.
Mencía, C., A. Ignatiev, A. Previti, and J. Marques-Silva, "MCS extraction with sublinear oracle queries", International Conference on Theory and Applications of Satisfiability Testing: Springer, pp. 342–360, 2016.
Costa, P. A. R. S., X. Bai, F. M. V. Ramos, and M. Correia, "Medusa: An efficient cloud fault-tolerant mapreduce", Cluster, Cloud and Grid Computing (CCGrid), 2016 16th IEEE/ACM International Symposium on: IEEE, pp. 443–452, 2016.
Fonseca, A., and R. Barbosa, "MISO: An intermediate language to express parallel and dependable programs", arXiv preprint arXiv:1608.06171, 2016.
Marques, G., A. Respicio, and A. Paula Afonso, "A Mobile Recommendation System Supporting Group Collaborative Decision Making", Procedia Computer Science, vol. 96: Elsevier, pp. 560–567, 2016.
Leão, C., P. Barbosa, A. Usié, I. Chaves, A. Amaro, A. Botelho, C. Pinto, J. Inácio, K. Stevenson, and AM. Ramos, Molecular characterization of a rare pigmented Mycobacterium avium subsp. paratuberculosis Type C strain, , 2016.
2014
Oliveira, J. Lobato, K. Nakamura, T. Langlois, F. Gouyon, K. Nakadai, A. Lim, L. Paulo Reis, and H. G. Okuno, "Making a robot dance to diverse musical genre in noisy environments", Intelligent Robots and Systems (IROS 2014), 2014 IEEE/RSJ International Conference on: IEEE, pp. 1896–1901, 2014.
Marques, D. H., T. Guerreiro, and L. Carriço, "Measuring snooping behavior with surveys: it's how you ask it", CHI'14 Extended Abstracts on Human Factors in Computing Systems: ACM, pp. 2479–2484, 2014.
Souza, J. L. R., R. Pinto, and J. Rufino, "Mechanisms to enforce dependability and timeliness in wireless communications", Wireless for Space and Extreme Environments (WiSEE), 2014 IEEE International Conference on: IEEE, pp. 1–6, 2014.
Hijón-Neira, R., Á. Velázquez-Iturbide, C. Pizarro-Romero, and L. Carriço, "Merlin-know, an interactive virtual teacher for improving learning in Moodle", Frontiers in Education Conference (FIE), 2014 IEEE: IEEE, pp. 1–8, 2014.
Barbosa, P., O. Dias, J. P. Arrais, and M. Rocha, "Metagenomic Analysis of the Saliva Microbiome with Merlin", 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014): Springer, pp. 191–199, 2014.
Gonçalves, D., M. Vigo, and L. Carriço, "Mobile accessibility", Universal Access in the Information Society, vol. 13, no. 3: Springer Berlin Heidelberg, pp. 255–256, 2014.
Nicolau, H., T. Guerreiro, D. Lucas, and J. Jorge, "Mobile text-entry and visual demands: reusing and optimizing current solutions", Universal Access in the Information Society, vol. 13, no. 3: Springer Berlin Heidelberg, pp. 291–301, 2014.
Nicolau, H., T. Guerreiro, J. Jorge, and D. Gonçalves, "Mobile touchscreen user interfaces: bridging the gap between motor-impaired and able-bodied users", Universal Access in the Information Society, vol. 13, no. 3: Springer Berlin Heidelberg, pp. 303–313, 2014.
Cruz, N., and H. Miranda, "MobIPLity: a trace-based mobility scenario generator for mobile applications", Proceedings of the 11th International Conference on Mobile and Ubiquitous Systems: Computing, Networking and Services: ICST (Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering), pp. 228–237, 2014.
Alchieri, E. Adilio Pel, A. Neves Bessani, F. Greve, and J. da Silva Fraga, "Modular Quorum Systems Reconfigurations", Computer Networks and Distributed Systems (SBRC), 2014 Brazilian Symposium on: IEEE, pp. 147–155, 2014.
Serra, S., A. Jorge, and T. Chambel, "Multimodal Access to Georeferenced Mobile Video through Shape, Speed and Time", Proceedings of the 28th International BCS Human Computer Interaction Conference on HCI 2014-Sand, Sea and Sky-Holiday HCI: BCS, pp. 347–352, 2014.
Mostrous, D., "Multiparty Sessions based on Proof Nets", Programming Language Approaches to Concurrency and Communication-cEntric Software (PLACES), 2014.
2013
Alves, J., A. Casimiro, and L. Marques, "Middleware support for adaptive real-time applications in wireless sensor networks", Dependable Computing: Springer Berlin Heidelberg, pp. 16–23, 2013.
Ramos, F. M. V., "Mitigating IPTV zapping delay", Communications Magazine, IEEE, vol. 51, no. 8: IEEE, pp. 128–133, 2013.
Cruz, N., H. Miranda, and P. Ribeiro, "A mobilidade dos utilizadores da eduroam ao longo dos anos", Atas do 5o Simpósio de Informática (INForum 2013), Évora, Portugal, Universidade de Évora, 2013.
Fiadeiro, J. Luiz, and A. Lopes, "A model for dynamic reconfiguration in service-oriented architectures", Software & Systems Modeling, vol. 12, no. 2: Springer-Verlag, pp. 349–367, 2013.
Lima, D., D. Domingos, H. Miranda, and C. Fontana, "Modelos de Publicação/Subscrição na Internet of Things", Atas do 5o Simpósio de Informática (INForum 2013), Évora, Portugal, Universidade de Évora, 2013.
Biswas, P., C. Duarte, P. Langdon, L. Almeida, and C. Jung, A Multimodal End-2-End Approach to Accessible Computing, : Springer, 2013.
2012
Fernandes, N., and L. Carriço, "A macroscopic Web accessibility evaluation at different processing phases", Proceedings of the International Cross-Disciplinary Conference on Web Accessibility: ACM, pp. 18, 2012.
Diniz, N. V., C. Duarte, and N. Guimarães, "Mapping interaction onto media façades", Proceedings of the 2012 International Symposium on Pervasive Displays: ACM, pp. 14, 2012.
Alchieri, E., A. Neves Bessani, J. da Silva Fraga, and F. Greve, "Memória compartilhada em sistemas bizantinos dinâmicos", Anais XIII Workshop de Teste e Tolerância a Falhas, 2012.
Faria, D., A. Schlicker, C. Pesquita, H. Bastos, A. E. N. Ferreira, M. Albrecht, and A. O. Falcao, "Mining GO annotations for improving annotation consistency", PloS one, vol. 7, no. 7: Public Library of Science, pp. e40519, 2012.
Pombinho, P., A. Paula Afonso, M. Beatriz Carmo, and C. Grande, "Mixed Environment Adaptive System for Point of Interest Awareness", LAMDa Workshop, IUI, 2012.
Gay, S. J., N. Gesbert, A. Ravara, and V. T. Vasconcelos, "Modular session types for objects", arXiv preprint arXiv:1205.5344, 2012.
2011
Zamite, J., F. Silva, F. Couto, and M. J. Silva, "MEDCollector: Multisource epidemic data collector", Transactions on large-scale data-and knowledge-centered systems IV: Springer Berlin Heidelberg, pp. 40–72, 2011.
Valente, B., and F. Martins, "A middleware framework for the Internet of Things", AFIN 2011, The Third International Conference on Advances in Future Internet, pp. 139–144, 2011.
Gonçalves, D., L. Carriço, and M. Vigo, "Mobile accessibility workshop", Human-Computer Interaction–INTERACT 2011: Springer Berlin Heidelberg, pp. 734–735, 2011.
Prata, A., and T. Chambel, "Mobility in a Personalized and Flexible Video-based Transmedia Environment", UBICOMM 2011, The Fifth International Conference on Mobile Ubiquitous Computing, Systems, Services and Technologies, pp. 314–320, 2011.
Zhang, H., M. Constantino, and A. O. Falcao, "Modeling forest core area with integer programming", Annals of Operations Research, vol. 190, no. 1: Springer US, pp. 41–55, 2011.
Simões, T., N. Charro, J. Blonder, D. Faria, F. Couto, K. C. Chan, T. Waybright, H. J. Isaaq, T. D. Veenstra, and D. Penque, "Molecular profiling of the human nasal epithelium: A proteomics approach", Journal of proteomics, vol. 75, no. 1: Elsevier, pp. 56–69, 2011.
Martins, P., T. Langlois, and T. Chambel, "MovieClouds: content-based overviews and exploratory browsing of movies", Proceedings of the 15th International Academic MindTrek Conference: Envisioning Future Media Environments: ACM, pp. 133–140, 2011.
Biswas, P., P. Langdon, C. Duarte, and J. Coelho, "Multimodal adaptation through simulation for digital TV interface", Proceddings of the 9th international interactive conference on Interactive television: ACM, pp. 231–234, 2011.
2009
Pesquita, C., D. Faria, and F. Couto, "Measuring coherence between electronic and manual annotations in biological databases", Proceedings of the 2009 ACM symposium on Applied Computing: ACM, pp. 806–807, 2009.
Garbinato, B\^ıt., H. Miranda, and L. Rodrigues, Middleware for Network Eccentric and Mobile Applications, : Springer-Verlag New York Inc, 2009.
Lopes, L., F. Martins, and J. Barros, Middleware for Network Eccentric and Mobile Applications, chapter 2, : Springer-Verlag, 2009.
Veronese, G. Santos, M. Correia, A. Neves Bessani, C. L Lung, and P. Verissimo, Minimal Byzantine fault tolerance: Algorithm and evaluation, , 2009.
Reis, T., L. Carriço, and C. Duarte, "Mobile interaction: Automatically adapting audio output to users and contexts on communication and media control scenarios", Universal Access in Human-Computer Interaction. Intelligent and Ubiquitous Interaction Environments: Springer, pp. 384–393, 2009.
de Sá, M., and L. Carriço, "Mobile support for personalized therapies: OminSCOPE: Richer artefacts and data collection", Pervasive Computing Technologies for Healthcare, 2009. PervasiveHealth 2009. 3rd International Conference on: IEEE, pp. 1–8, 2009.
de Sá, M., and L. Carriço, "A mobile tool for in-situ prototyping", Proceedings of the 11th International Conference on Human-Computer Interaction with Mobile Devices and Services: ACM, pp. 20, 2009.
Antunes, P., G. Zurita, and N. Baloian, "A model for designing geocollaborative artifacts and applications", Groupware: Design, Implementation, and Use: Springer Berlin Heidelberg, pp. 278–294, 2009.
Lopes, R., and L. Carriço, "Modeling Web accessibility for rich document production", Journal of Access Services, vol. 6, no. 1-2: Taylor & Francis, pp. 237–260, 2009.
Martinho, R., J. Varajao, and D. Domingos, "Modelling and learning controlled flexibility in software processes", International Journal of Knowledge and Learning, vol. 5, no. 5: Inderscience, pp. 423–442, 2009.
Ferreira, P. Lopes, and P. Antunes, "Monitorização da satisfação dos profissionais das USF", Coimbra: Centro de Estudos e Investigação em Saúde da Universidade de Coimbra (CEISUC), 2009.
Raposo, D., and T. Chambel, "Movie table: tangible interaction with movies", Proceedings of the 13th International MindTrek Conference: Everyday Life in the Ubiquitous Era: ACM, pp. 217–217, 2009.
Raposo, D., and T. Chambel, MovieTable: Interacção Tang{ível com Filmes, : EPCG'2009, 17º Encontro Português de Computação Gráfica, 2009.
Langlois, T., and G. Marques, "A Music Classification Method based on Timbral Features.", ISMIR, pp. 81–86, 2009.
2008
Reis, T., L. Carriço, and M. de Sá, Manipulação de Artefactos Moveis Multimodais: Avaliação e Estudos Comportamentais em Contextos Reais, : Interacção'2008, 3ª Conferência Nacional em Interfaces Pessoa-Máquina, 2008.
Pesquita, C., D. Faria, H. Bastos, A. Ferreira, A. O. Falcao, and F. Couto, "Metrics for GO based protein semantic similarity: a systematic evaluation", BMC bioinformatics, vol. 9, no. Suppl 5: BioMed Central Ltd, pp. S4, 2008.
Giunti, M., V. T. Vasconcelos, M. Loreti, and G. Luigi Ferrari, Middleware for Transactions and Abstract Services, , 2008.
Veronese, G. Santos, M. Correia, C. L Lung, and A. Neves Bessani, Minimal Byzantine fault tolerance, : Department of Informatics, University of Lisbon, 2008.
de Sá, M., L. Carriço, L. Duarte, and T. Reis, "A mixed-fidelity prototyping tool for mobile devices", Proceedings of the working conference on Advanced visual interfaces: ACM, pp. 225–232, 2008.
de Sá, M., C. Duarte, and L. Carriço, Mobile interaction design: Techniques for early stage in-situ design, : INTECH Open Access Publisher, 2008.
Reis, T., M. de Sá, L. Duarte, and L. Carriço, "A Mobile Therapy Framework: Multimodal Extensions and Usage Examples", Procs of the IADIS International Conference on Applied Computing, Algarve-Portugal, pp. 133–140, 2008.
Lopes, R., and L. Carriço, A model for universal usability on the Web, , 2008.
Rosa, L., A. Lopes, and L. Rodrigues, "Modelling adaptive services for distributed systems", Proceedings of the 2008 ACM symposium on Applied computing: ACM, pp. 2174–2180, 2008.
Santos, A. L., and K. Koskimies, "Modular Hot Spots: A Pattern Language for Developing High-Level Framework Reuse Interfaces using Aspects.", EuroPLOP, 2008.
Vasconcelos, V. T., I. Nunes, A. Lopes, N. Ramiro, and P. Crispim, "Monitoring java code using ConGu", WADT 2008 Preliminary Proceedings, pp. 61, 2008.
Carmo, M. Beatriz, A. Paula Afonso, P. Pombinho De Matos, and A. Vaz, "MoViSys–a visualization system for geo-referenced information on mobile devices", Visual Information Systems. Web-Based Visual Information Search and Management: Springer Berlin Heidelberg, pp. 167–178, 2008.
Vaz, A., P. P. de Matos, A. Paula Afonso, and M. Beatriz Carmo, "MoViSys–Um Sistema de Visualização para Dispositivos Móveis", Actas Interacção 2008, pp. 165–174, 2008.
Reis, T., M. de Sá, and L. Carriço, "Multimodal artefact manipulation: Evaluation in real contexts", Pervasive Computing and Applications, 2008. ICPCA 2008. Third International Conference on, vol. 2: IEEE, pp. 570–575, 2008.
Reis, T., M. de Sá, and L. Carriço, "Multimodal interaction: Real context studies on mobile digital artefacts", Haptic and Audio Interaction Design: Springer Berlin Heidelberg, pp. 60–69, 2008.
de Sá, M., L. Carriço, L. Duarte, and T. Reis, Multi-Purpose Mobile Artefacts, : International Journal of Smart Home, 2008.
de Sá, M., L. Carriço, L. Duarte, and T. Reis, "Multi-purpose proactive m-Artifacts", Proceedings of the 2008 ACM symposium on Applied computing: ACM, pp. 1629–1633, 2008.
Domaschka, J., T. Bestfleisch, F. J. Hauck, H. P. Reiser, and R. Kapitza, "Multithreading strategies for replicated objects", Proceedings of the 9th ACM/IFIP/USENIX International Conference on Middleware: Springer-Verlag New York, Inc., pp. 104–123, 2008.
2006
Azevedo, NF., C. Almeida, N. Guimarães, CW. Keevil, and MJ. Vieira, Maintenance of spiral morphology and formation of biofilms on copper surfaces by water-exposed Helicobacter pylori, , 2006.
Gomes, D., A. L. Santos, and M. J. Silva, "Managing duplicates in a web archive", Proceedings of the 2006 ACM symposium on Applied computing: ACM, pp. 818–825, 2006.
Couto, F., and M. J. Silva, "Mining BioLiterature: Toward Automatic", Advanced Data Mining Technologies in Bioinformatics: IGI Global, pp. 283, 2006.
Silva, M. J., and F. Couto, Mining the BioLiterature: towards automatic annotation of genes and proteins, : Advanced Data Mining Technologies in Bioinformatics, Idea Group IncIdea Group Inc, 2006.
Carriço, L., M. de Sá, and P. Antunes, "Mobile devices for active psychotherapy", Proceedings of the 8th Int. Conference on Enterprise Information Systems, Paphos, Cyprus, 2006.

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